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Euclidean skeletons using closest points
An algorithm for recovering unknown projection orientations and shifts in 3D tomography
1.  Department of Mathematics and Physics, Lappeenranta University of Technology, Lappeenranta, Finland 
2.  Department of Mathematics and Statistics, University of Helsinki, P.O. Box 68, 00014 Helsinki, 
References:
[1] 
S. Basu and Y. Bresler, Uniqueness of tomography with unknown view angles,, IEEE Transactions on Image Processing, 9 (2000), 1094. doi: 10.1109/83.846251. Google Scholar 
[2] 
S. Basu and Y. Bresler, Feasibility of tomography with unknown view angles,, IEEE Transactions on Image Processing, 9 (2000), 1107. doi: 10.1109/83.846252. Google Scholar 
[3] 
S. Basu and Y. Bresler, The stability of nonlinear least squares problems and the CramérRao Bound,, IEEE Transactions on Signal Processing, 48 (2000), 3426. doi: 10.1109/78.887032. Google Scholar 
[4] 
D. Cox, J. Little and D. O'Shea, "Ideals, Varieties and Algorithms: An Introduction to Computational Algebraic Geometry and Commutative Algebra,", Undergraduate Texts in Mathematics, (1997). Google Scholar 
[5] 
D. Cox, J. Little and D. O'Shea, "Using Algebraic Geometry,", Graduate Texts in Mathematics, (1998). Google Scholar 
[6] 
D. N. P. Doan, K. C. Lee , P. Laurinmäki, S. Butcher, SM. Wong and T. Dokland, Threedimensional reconstruction of hibiscus chlorotic ringspot virus,, Journal of Structural Biology, 144 (2003), 253. doi: 10.1016/j.jsb.2003.10.001. Google Scholar 
[7] 
P. C. Doerschuk and J. E. Johnson, Ab initio reconstruction and experimental design for cryo electron microscopy,, IEEE Transactions on Information Theory, 46 (2000), 1714. doi: 10.1109/18.857786. Google Scholar 
[8] 
A. V. Fiacco, "Introduction to Sensitivity and Stability Analysis in Nonlinear Programming,", Academic, (1983). Google Scholar 
[9] 
J. Frank, "Threedimensional Electron Microscopy of Macromolecular Assemblies,", CA: Academic, (1996). Google Scholar 
[10] 
M. S. Gelfand and A. B. Goncharov, Spational rotational alignment of identical particles given their projections: Theory and practice,, in, 81 (1990), 97. Google Scholar 
[11] 
M. Giaquinta and S. Hildebrandt, "Calculus of Variations I,", A Series of Comprehensive Studies in Mathematics, (1996). Google Scholar 
[12] 
A. B. Goncharov, Integral geometry and threedimensional reconstruction of randomly oriented identical particles from their electron microphotos,, Acta Applicandae Mathematicae, 11 (1988), 199. doi: 10.1007/BF00140118. Google Scholar 
[13] 
A. B. Goncharov, Threedimensional reconstruction of arbitrarily arranged identical particles given their projections,, in, 81 (1990), 67. Google Scholar 
[14] 
M. Hedley and H. Yan, Motion artifact suppression: A review of postprocessing techniques,, Magnetic Resonance Imaging, 10 (1992), 627. doi: 10.1016/0730725X(92)90014Q. Google Scholar 
[15] 
S. G. Krantz and H. R. Parks, "A Primer of Real Analytic Functions,", Birkhäuser, (1992). Google Scholar 
[16] 
L. Lamberg, Unique recovery of unknown projection orientations in threedimensional tomography,, Inverse Problems and Imaging, 2 (2008), 547. doi: 10.3934/ipi.2008.2.547. Google Scholar 
[17] 
L. Lamberg and L. Ylinen, Twodimensional tomography with unknown view angles,, Inverse Problems and Imaging, 1 (2007), 623. Google Scholar 
[18] 
P. D. Lauren and N. Nandhakumar, Estimating the viewing parameters of random, noisy projections of asymmetric objects for tomographic reconstruction,, IEEE Transactions on Pattern Analysis and Machine Intelligence, 19 (1997), 417. doi: 10.1109/34.589202. Google Scholar 
[19] 
E. Lehmann, "Theory of Point Estimation,", Springer, (1998). Google Scholar 
[20] 
S. P. Mallick, S. Agarwal, D. J. Kriegman, S. J. Belongie, B. Carragher and C. S. Potter, Structure and View Estimation for Tomographic Reconstruction: A Bayesian Approach,, Computer Vision and Pattern Recognition, 2 (2006), 2253. Google Scholar 
[21] 
F. Natterer, "The Mathematics of Computerized Tomography,", John Wiley & Sons Inc, (1986). Google Scholar 
[22] 
V. M. Panaretos, On random tomography with unobservable projection angles,, Submitted to the Annals of Statistic., (). Google Scholar 
[23] 
D. B. Salzman, A method of general moments for orienting 2D projections of unknown 3D objects,, Computer Vision, 50 (1990), 129. doi: 10.1016/0734189X(90)90038W. Google Scholar 
[24] 
I. R. Shafarevich, "Basic Algebraic Geometry,", SpringerVerlag, (1974). Google Scholar 
[25] 
D. C. Solmon, The Xray transform,, Journal of Mathematical Analysis and Applications, 56 (1976), 61. doi: 10.1016/0022247X(76)900081. Google Scholar 
[26] 
M. Van Heel, Angular reconstitution: A posteriori assignment of projection directions for 3D reconstruction,, Ultramicroscopy, 21 (1987), 111. doi: 10.1016/03043991(87)900787. Google Scholar 
[27] 
H. L. Van Trees, "Detection, Estimation, and Modulation Theory, Part 1,", John Wiley, (1968). Google Scholar 
[28] 
G. Wahba, "Spline Models for Observational Data,", Society for Industrial and Applied Mathematics, (1990). Google Scholar 
show all references
References:
[1] 
S. Basu and Y. Bresler, Uniqueness of tomography with unknown view angles,, IEEE Transactions on Image Processing, 9 (2000), 1094. doi: 10.1109/83.846251. Google Scholar 
[2] 
S. Basu and Y. Bresler, Feasibility of tomography with unknown view angles,, IEEE Transactions on Image Processing, 9 (2000), 1107. doi: 10.1109/83.846252. Google Scholar 
[3] 
S. Basu and Y. Bresler, The stability of nonlinear least squares problems and the CramérRao Bound,, IEEE Transactions on Signal Processing, 48 (2000), 3426. doi: 10.1109/78.887032. Google Scholar 
[4] 
D. Cox, J. Little and D. O'Shea, "Ideals, Varieties and Algorithms: An Introduction to Computational Algebraic Geometry and Commutative Algebra,", Undergraduate Texts in Mathematics, (1997). Google Scholar 
[5] 
D. Cox, J. Little and D. O'Shea, "Using Algebraic Geometry,", Graduate Texts in Mathematics, (1998). Google Scholar 
[6] 
D. N. P. Doan, K. C. Lee , P. Laurinmäki, S. Butcher, SM. Wong and T. Dokland, Threedimensional reconstruction of hibiscus chlorotic ringspot virus,, Journal of Structural Biology, 144 (2003), 253. doi: 10.1016/j.jsb.2003.10.001. Google Scholar 
[7] 
P. C. Doerschuk and J. E. Johnson, Ab initio reconstruction and experimental design for cryo electron microscopy,, IEEE Transactions on Information Theory, 46 (2000), 1714. doi: 10.1109/18.857786. Google Scholar 
[8] 
A. V. Fiacco, "Introduction to Sensitivity and Stability Analysis in Nonlinear Programming,", Academic, (1983). Google Scholar 
[9] 
J. Frank, "Threedimensional Electron Microscopy of Macromolecular Assemblies,", CA: Academic, (1996). Google Scholar 
[10] 
M. S. Gelfand and A. B. Goncharov, Spational rotational alignment of identical particles given their projections: Theory and practice,, in, 81 (1990), 97. Google Scholar 
[11] 
M. Giaquinta and S. Hildebrandt, "Calculus of Variations I,", A Series of Comprehensive Studies in Mathematics, (1996). Google Scholar 
[12] 
A. B. Goncharov, Integral geometry and threedimensional reconstruction of randomly oriented identical particles from their electron microphotos,, Acta Applicandae Mathematicae, 11 (1988), 199. doi: 10.1007/BF00140118. Google Scholar 
[13] 
A. B. Goncharov, Threedimensional reconstruction of arbitrarily arranged identical particles given their projections,, in, 81 (1990), 67. Google Scholar 
[14] 
M. Hedley and H. Yan, Motion artifact suppression: A review of postprocessing techniques,, Magnetic Resonance Imaging, 10 (1992), 627. doi: 10.1016/0730725X(92)90014Q. Google Scholar 
[15] 
S. G. Krantz and H. R. Parks, "A Primer of Real Analytic Functions,", Birkhäuser, (1992). Google Scholar 
[16] 
L. Lamberg, Unique recovery of unknown projection orientations in threedimensional tomography,, Inverse Problems and Imaging, 2 (2008), 547. doi: 10.3934/ipi.2008.2.547. Google Scholar 
[17] 
L. Lamberg and L. Ylinen, Twodimensional tomography with unknown view angles,, Inverse Problems and Imaging, 1 (2007), 623. Google Scholar 
[18] 
P. D. Lauren and N. Nandhakumar, Estimating the viewing parameters of random, noisy projections of asymmetric objects for tomographic reconstruction,, IEEE Transactions on Pattern Analysis and Machine Intelligence, 19 (1997), 417. doi: 10.1109/34.589202. Google Scholar 
[19] 
E. Lehmann, "Theory of Point Estimation,", Springer, (1998). Google Scholar 
[20] 
S. P. Mallick, S. Agarwal, D. J. Kriegman, S. J. Belongie, B. Carragher and C. S. Potter, Structure and View Estimation for Tomographic Reconstruction: A Bayesian Approach,, Computer Vision and Pattern Recognition, 2 (2006), 2253. Google Scholar 
[21] 
F. Natterer, "The Mathematics of Computerized Tomography,", John Wiley & Sons Inc, (1986). Google Scholar 
[22] 
V. M. Panaretos, On random tomography with unobservable projection angles,, Submitted to the Annals of Statistic., (). Google Scholar 
[23] 
D. B. Salzman, A method of general moments for orienting 2D projections of unknown 3D objects,, Computer Vision, 50 (1990), 129. doi: 10.1016/0734189X(90)90038W. Google Scholar 
[24] 
I. R. Shafarevich, "Basic Algebraic Geometry,", SpringerVerlag, (1974). Google Scholar 
[25] 
D. C. Solmon, The Xray transform,, Journal of Mathematical Analysis and Applications, 56 (1976), 61. doi: 10.1016/0022247X(76)900081. Google Scholar 
[26] 
M. Van Heel, Angular reconstitution: A posteriori assignment of projection directions for 3D reconstruction,, Ultramicroscopy, 21 (1987), 111. doi: 10.1016/03043991(87)900787. Google Scholar 
[27] 
H. L. Van Trees, "Detection, Estimation, and Modulation Theory, Part 1,", John Wiley, (1968). Google Scholar 
[28] 
G. Wahba, "Spline Models for Observational Data,", Society for Industrial and Applied Mathematics, (1990). Google Scholar 
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